IntroductionΒΆ
kmviz is a web interface that allows querying sequence indexes and exploring the metadata associated with the results. An instance can query multiple Databases
(a Provider
and MetaDB
pair). This part of the documentation focuses on using the interface and the REST API. The Advanced section covers running kmviz instances, implementing plugins, and deployment, and is intended for users interested in hosting instances. However, running an instance locally on a personal machine can be useful in several cases:
- One can host a
Provider
and aMetaDB
but not kmviz. In this case, you can run the instance locally, which will connect to these services. See X. - To visualize previous results. Results can be reloaded later, using a
session-id
(see Session ID) on a remote instance for a duration that depends on the configuration. However, the session can also be downloaded and reviewed in a local instance, which is advisable as it reduces the load on the shared service. SeeDownload
andsession
mode. - To visualize a session file obtained using the API. Similar to the previous point, this reduces the load on the shared service and recommended. Note that the API is optional and some instances may not support it. One can also host only the API without the graphical interface. See session API and
session
mode. - kmviz has a
plot
mode allowing to make maps and plots from arbitrary data, i.e. a partial graphical interface for plotly. See Plot mode.