Provider

kmindex server (kmindex >= v0.5.3)

Parameter	Description	Default	Required
url	Index url	-
port	Port	-

kmindex_server_ex.yaml

Example:
  type: "kmindex-server"
  params:
    url: "127.0.0.1"
    port: 8080

kmindex_server_ex.toml

[databases.Example]
type = "kmindex-server"
[databases.Example.params]
url = "127.0.0.1"
port = 8080

User options

• z: See kmindex documentation.
• coverage: The min ratio of shared k-mer to consider a match between a query and a sample.